J4_8QOI_011
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8QOI|1|L5|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QOI_011 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2125
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8QOI|1|L5|C|4231
8QOI|1|L5|U|4232
8QOI|1|L5|A|4233
8QOI|1|L5|A|4234
8QOI|1|L5|G|4235
*
8QOI|1|L5|U|4289
8QOI|1|L5|U|4290
8QOI|1|L5|G|4291
8QOI|1|L5|A|4292
8QOI|1|L5|PSU|4293
*
8QOI|1|L5|A|4317
8QOI|1|L5|C|4318
8QOI|1|L5|C|4319
*
8QOI|1|L5|G|4328
8QOI|1|L5|G|4329
8QOI|1|L5|G|4330
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: