J4_8QOI_013
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- C(A2M)(PSU)UAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8QOI|1|S2|G|407
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QOI_013 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2406
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8QOI|1|S2|C|98
8QOI|1|S2|A2M|99
8QOI|1|S2|PSU|100
8QOI|1|S2|U|101
8QOI|1|S2|A|102
8QOI|1|S2|A|103
8QOI|1|S2|A|104
8QOI|1|S2|PSU|105
8QOI|1|S2|C|106
*
8QOI|1|S2|G|355
8QOI|1|S2|C|356
8QOI|1|S2|C|357
*
8QOI|1|S2|G|405
8QOI|1|S2|PSU|406
8QOI|1|S2|G|407
8QOI|1|S2|A|408
8QOI|1|S2|C|409
*
8QOI|1|S2|G|431
8QOI|1|S2|G|432
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
Coloring options: