J4_8QPP_005

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8QPP|1|X|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QPP_005 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1387

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8QPP|1|X|C|271
8QPP|1|X|C|272
*
8QPP|1|X|G|417
8QPP|1|X|A|418
8QPP|1|X|G|419
8QPP|1|X|U|420
8QPP|1|X|A|421
8QPP|1|X|C|422
*
8QPP|1|X|G|446
8QPP|1|X|G|447
8QPP|1|X|A|448
8QPP|1|X|A|449
8QPP|1|X|U|450
8QPP|1|X|C|451
8QPP|1|X|C|452
8QPP|1|X|G|453
*
8QPP|1|X|C|468
8QPP|1|X|A|469
8QPP|1|X|A|470
8QPP|1|X|G|471

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain v

Large ribosomal subunit protein bL28