J4_8QPP_009

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8QPP|1|X|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QPP_009 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0945

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8QPP|1|X|G|1349
8QPP|1|X|U|1350
8QPP|1|X|U|1351
8QPP|1|X|U|1352
8QPP|1|X|C|1353
*
8QPP|1|X|G|1377
8QPP|1|X|G|1378
8QPP|1|X|U|1379
8QPP|1|X|U|1380
8QPP|1|X|A|1381
8QPP|1|X|G|1382
*
8QPP|1|X|C|1443
8QPP|1|X|C|1444
*
8QPP|1|X|G|1642
8QPP|1|X|C|1643
8QPP|1|X|C|1644
8QPP|1|X|C|1645
8QPP|1|X|G|1646
8QPP|1|X|U|1647
8QPP|1|X|A|1648
8QPP|1|X|C|1649

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23