J4_8QYX_004

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8QYX|1|A2|A|2366, 8QYX|1|A2|U|2369, 8QYX|1|A2|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|OMC|2365
8QYX|1|A2|A|2366
8QYX|1|A2|A|2367
8QYX|1|A2|A|2368
8QYX|1|A2|U|2369
8QYX|1|A2|A|2370
8QYX|1|A2|U|2371
*
8QYX|1|A2|A|2389
8QYX|1|A2|G|2390
8QYX|1|A2|G|2391
*
8QYX|1|A2|OMC|2824
8QYX|1|A2|A|2825
8QYX|1|A2|U|2826
8QYX|1|A2|G|2827
8QYX|1|A2|U|2828
8QYX|1|A2|U|2829
*
8QYX|1|A2|A|3856
8QYX|1|A2|G|3857

Current chains

Chain A2

28S rRNA

Nearby chains

Chain J1

60S ribosomal protein L17

Chain L1

60S ribosomal protein L19

Chain X1

60S ribosomal protein L31