J4_8QYX_009

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QYX_009 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0865

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8QYX|1|A2|G|3634
8QYX|1|A2|A|3635
8QYX|1|A2|C|3636
8QYX|1|A2|PSU|3637
8QYX|1|A2|G|3638
*
8QYX|1|A2|C|3650
8QYX|1|A2|A|3651
8QYX|1|A2|A|3652
8QYX|1|A2|A|3653
8QYX|1|A2|G|3654
*
8QYX|1|A2|U|3690
8QYX|1|A2|G|3691
8QYX|1|A2|A|3692
8QYX|1|A2|U|3693
8QYX|1|A2|U|3694
*
8QYX|1|A2|A|3821
8QYX|1|A2|PSU|3822
8QYX|1|A2|G|3823
8QYX|1|A2|A|3824
8QYX|1|A2|A2M|3825
8QYX|1|A2|C|3826

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain j1

60S ribosomal protein L37a