J4_8QYX_010

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

8QYX|1|A2|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QYX_010 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1198

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8QYX|1|A2|C|3696
8QYX|1|A2|U|3697
8QYX|1|A2|G|3698
*
8QYX|1|A2|C|3752
8QYX|1|A2|G|3753
*
8QYX|1|A2|C|3771
8QYX|1|A2|U|3772
8QYX|1|A2|U|3773
8QYX|1|A2|A|3774
8QYX|1|A2|A|3775
8QYX|1|A2|G|3776
8QYX|1|A2|G|3777
8QYX|1|A2|U|3778
8QYX|1|A2|A|3779
8QYX|1|A2|G|3780
*
8QYX|1|A2|U|3814
8QYX|1|A2|G|3815
8QYX|1|A2|A|3816
8QYX|1|A2|A|3817
8QYX|1|A2|UY1|3818
8QYX|1|A2|G|3819

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2