J4_8R55_006

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8R55|1|X|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_006 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.148

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8R55|1|X|C|271
8R55|1|X|C|272
*
8R55|1|X|G|417
8R55|1|X|A|418
8R55|1|X|G|419
8R55|1|X|U|420
8R55|1|X|A|421
8R55|1|X|C|422
*
8R55|1|X|G|446
8R55|1|X|G|447
8R55|1|X|A|448
8R55|1|X|A|449
8R55|1|X|U|450
8R55|1|X|C|451
8R55|1|X|C|452
8R55|1|X|G|453
*
8R55|1|X|C|468
8R55|1|X|A|469
8R55|1|X|A|470
8R55|1|X|G|471

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain v

Large ribosomal subunit protein bL28