J4_8R55_011

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8R55|1|X|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_011 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0951

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8R55|1|X|U|1352
8R55|1|X|C|1353
*
8R55|1|X|G|1377
8R55|1|X|G|1378
8R55|1|X|U|1379
8R55|1|X|U|1380
8R55|1|X|A|1381
8R55|1|X|G|1382
*
8R55|1|X|C|1443
8R55|1|X|C|1444
*
8R55|1|X|G|1642
8R55|1|X|C|1643
8R55|1|X|C|1644
8R55|1|X|C|1645
8R55|1|X|G|1646
8R55|1|X|U|1647
8R55|1|X|A|1648

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain s

Large ribosomal subunit protein uL23