J4_8R55_016

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_016 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1994

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8R55|1|X|G|2672
8R55|1|X|A|2673
8R55|1|X|G|2674
8R55|1|X|C|2675
*
8R55|1|X|G|2703
8R55|1|X|A|2704
8R55|1|X|C|2705
*
8R55|1|X|G|2760
8R55|1|X|G|2761
8R55|1|X|A|2762
8R55|1|X|C|2763
8R55|1|X|G|2764
*
8R55|1|X|C|2798
8R55|1|X|C|2799
8R55|1|X|C|2800

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain e

Large ribosomal subunit protein uL13

Chain f

50S ribosomal protein L14