J4_8R8M_012

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R8M_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0336

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8R8M|1|a|A|1772
8R8M|1|a|A|1773
8R8M|1|a|C|1774
8R8M|1|a|U|1775
8R8M|1|a|G|1776
*
8R8M|1|a|C|1788
8R8M|1|a|A|1789
8R8M|1|a|C|1790
8R8M|1|a|A|1791
8R8M|1|a|G|1792
*
8R8M|1|a|U|1827
8R8M|1|a|G|1828
8R8M|1|a|A|1829
8R8M|1|a|C|1830
*
8R8M|1|a|G|1975
8R8M|1|a|U|1976
8R8M|1|a|A|1977
8R8M|1|a|A|1978
8R8M|1|a|U|1979

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2