J4_8RCL_008

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCL_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0583

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RCL|1|72|A|1772
8RCL|1|72|A|1773
8RCL|1|72|C|1774
8RCL|1|72|U|1775
8RCL|1|72|G|1776
*
8RCL|1|72|C|1788
8RCL|1|72|A|1789
8RCL|1|72|C|1790
8RCL|1|72|A|1791
8RCL|1|72|G|1792
*
8RCL|1|72|U|1827
8RCL|1|72|G|1828
8RCL|1|72|A|1829
8RCL|1|72|C|1830
*
8RCL|1|72|G|1975
8RCL|1|72|U|1976
8RCL|1|72|A|1977
8RCL|1|72|A|1978
8RCL|1|72|U|1979

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain b2

50S ribosomal protein L2