J4_8RDV_002

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAAC*GACC*GUA*UGUAU

Length

17 nucleotides

Bulged bases

8RDV|1|Z2|U|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RDV_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.551

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8RDV|1|Z2|A|284
8RDV|1|Z2|G|285
8RDV|1|Z2|A|286
8RDV|1|Z2|A|287
8RDV|1|Z2|C|288
*
8RDV|1|Z2|G|303
8RDV|1|Z2|A|304
8RDV|1|Z2|C|305
8RDV|1|Z2|C|306
*
8RDV|1|Z2|G|310
8RDV|1|Z2|U|311
8RDV|1|Z2|A|312
*
8RDV|1|Z2|U|324
8RDV|1|Z2|G|325
8RDV|1|Z2|U|326
8RDV|1|Z2|A|327
8RDV|1|Z2|U|328

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4

Chain TI

Large ribosomal subunit protein uL24