J4_8RDW_008

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

AACUG*CACAG*UGAU*AUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RDW_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0588

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RDW|1|Z2|A|1758
8RDW|1|Z2|A|1759
8RDW|1|Z2|C|1760
8RDW|1|Z2|U|1761
8RDW|1|Z2|G|1762
*
8RDW|1|Z2|C|1774
8RDW|1|Z2|A|1775
8RDW|1|Z2|C|1776
8RDW|1|Z2|A|1777
8RDW|1|Z2|G|1778
*
8RDW|1|Z2|U|1813
8RDW|1|Z2|G|1814
8RDW|1|Z2|A|1815
8RDW|1|Z2|U|1816
*
8RDW|1|Z2|A|1961
8RDW|1|Z2|U|1962
8RDW|1|Z2|A|1963
8RDW|1|Z2|A|1964
8RDW|1|Z2|U|1965

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2