J4_8RDW_014
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GGG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8RDW|1|iN|A|859, 8RDW|1|iN|C|861, 8RDW|1|iN|A|863
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RDW_014 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0731
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
8RDW|1|iN|G|618
8RDW|1|iN|G|619
8RDW|1|iN|G|620
*
8RDW|1|iN|C|808
8RDW|1|iN|G|809
8RDW|1|iN|A|810
8RDW|1|iN|A|811
8RDW|1|iN|A|812
8RDW|1|iN|G|813
*
8RDW|1|iN|C|854
8RDW|1|iN|C|855
8RDW|1|iN|G|856
8RDW|1|iN|U|857
8RDW|1|iN|A|858
8RDW|1|iN|A|859
8RDW|1|iN|A|860
8RDW|1|iN|C|861
8RDW|1|iN|G|862
8RDW|1|iN|A|863
8RDW|1|iN|U|864
8RDW|1|iN|G|865
*
8RDW|1|iN|C|923
8RDW|1|iN|C|924
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain BQ
- Small ribosomal subunit protein uS8
- Chain KU
- Small ribosomal subunit protein uS11
- Chain L6
- Small ribosomal subunit protein uS12
- Chain NV
- Small ribosomal subunit protein bS21
- Chain OL
- Small ribosomal subunit protein uS15
- Chain QZ
- Small ribosomal subunit protein uS17
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
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