3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
8RJC|1|K|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8RJC_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.112
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

8RJC|1|K|C|111
8RJC|1|K|C|112
*
8RJC|1|K|G|278
8RJC|1|K|A|279
8RJC|1|K|G|280
8RJC|1|K|U|281
8RJC|1|K|C|282
8RJC|1|K|G|283
*
8RJC|1|K|C|304
8RJC|1|K|A|305
8RJC|1|K|A|306
8RJC|1|K|A|307
8RJC|1|K|G|308
8RJC|1|K|C|309
8RJC|1|K|G|310
*
8RJC|1|K|U|327
8RJC|1|K|A|328
8RJC|1|K|A|329
8RJC|1|K|G|330

Current chains

Chain K
28S rRNA

Nearby chains

Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain h
60S ribosomal protein L35
Chain i
60S ribosomal protein L36

Coloring options:


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