J4_8RJC_004

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8RJC|1|K|A|2366, 8RJC|1|K|U|2369, 8RJC|1|K|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|2365
8RJC|1|K|A|2366
8RJC|1|K|A|2367
8RJC|1|K|A|2368
8RJC|1|K|U|2369
8RJC|1|K|A|2370
8RJC|1|K|U|2371
*
8RJC|1|K|A|2389
8RJC|1|K|G|2390
8RJC|1|K|G|2391
*
8RJC|1|K|C|2824
8RJC|1|K|A|2825
8RJC|1|K|U|2826
8RJC|1|K|G|2827
8RJC|1|K|U|2828
8RJC|1|K|U|2829
*
8RJC|1|K|A|3856
8RJC|1|K|G|3857

Current chains

Chain K

28S rRNA

Nearby chains

Chain 4

Stress-associated endoplasmic reticulum protein

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

60S ribosomal protein L31