J4_8RJC_004
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CAAAUAU*AGG*CAUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 8RJC|1|K|A|2366, 8RJC|1|K|U|2369, 8RJC|1|K|U|2828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|C|2365
8RJC|1|K|A|2366
8RJC|1|K|A|2367
8RJC|1|K|A|2368
8RJC|1|K|U|2369
8RJC|1|K|A|2370
8RJC|1|K|U|2371
*
8RJC|1|K|A|2389
8RJC|1|K|G|2390
8RJC|1|K|G|2391
*
8RJC|1|K|C|2824
8RJC|1|K|A|2825
8RJC|1|K|U|2826
8RJC|1|K|G|2827
8RJC|1|K|U|2828
8RJC|1|K|U|2829
*
8RJC|1|K|A|3856
8RJC|1|K|G|3857
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain 4
- Stress-associated endoplasmic reticulum protein
- Chain P
- uL22
- Chain R
- Ribosomal protein L19
- Chain d
- 60S ribosomal protein L31
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