J4_8RPY_007

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RPY_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0525

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RPY|1|A|A|1772
8RPY|1|A|A|1773
8RPY|1|A|C|1774
8RPY|1|A|U|1775
8RPY|1|A|G|1776
*
8RPY|1|A|C|1788
8RPY|1|A|A|1789
8RPY|1|A|C|1790
8RPY|1|A|A|1791
8RPY|1|A|G|1792
*
8RPY|1|A|U|1827
8RPY|1|A|G|1828
8RPY|1|A|A|1829
8RPY|1|A|C|1830
*
8RPY|1|A|G|1975
8RPY|1|A|U|1976
8RPY|1|A|A|1977
8RPY|1|A|A|1978
8RPY|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2