J4_8RQ2_007

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RQ2_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0507

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RQ2|1|A|A|1772
8RQ2|1|A|A|1773
8RQ2|1|A|C|1774
8RQ2|1|A|U|1775
8RQ2|1|A|G|1776
*
8RQ2|1|A|C|1788
8RQ2|1|A|A|1789
8RQ2|1|A|C|1790
8RQ2|1|A|A|1791
8RQ2|1|A|G|1792
*
8RQ2|1|A|U|1827
8RQ2|1|A|G|1828
8RQ2|1|A|A|1829
8RQ2|1|A|C|1830
*
8RQ2|1|A|G|1975
8RQ2|1|A|U|1976
8RQ2|1|A|A|1977
8RQ2|1|A|A|1978
8RQ2|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2