J4_8RXH_014
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GGG*CCAAAG*CUGCAAACGAUG*CU
- Length
- 23 nucleotides
- Bulged bases
- 8RXH|1|S1|G|672, 8RXH|1|S1|C|1271, 8RXH|1|S1|A|1273, 8RXH|1|S1|C|1275, 8RXH|1|S1|A|1277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RXH_014 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.2513
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8RXH|1|S1|G|671
8RXH|1|S1|G|672
8RXH|1|S1|G|673
*
8RXH|1|S1|C|1222
8RXH|1|S1|C|1223
8RXH|1|S1|A|1224
8RXH|1|S1|A|1225
8RXH|1|S1|A|1226
8RXH|1|S1|G|1227
*
8RXH|1|S1|C|1268
8RXH|1|S1|U|1269
8RXH|1|S1|G|1270
8RXH|1|S1|C|1271
8RXH|1|S1|A|1272
8RXH|1|S1|A|1273
8RXH|1|S1|A|1274
8RXH|1|S1|C|1275
8RXH|1|S1|G|1276
8RXH|1|S1|A|1277
8RXH|1|S1|U|1278
8RXH|1|S1|G|1279
*
8RXH|1|S1|C|1455
8RXH|1|S1|U|1456
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain SJ
- Putative 40S ribosomal protein S15A
- Chain SO
- 40S ribosomal protein S14
- Chain SP
- Putative 40S ribosomal protein S23
- Chain ST
- Putative 40S ribosomal protein S13
- Chain SU
- Ribosomal protein S17 family protein
- Chain Sb
- 40S ribosomal protein S26
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