J4_8SCB_012
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8SCB|1|5|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8SCB_012 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2126
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8SCB|1|5|C|4231
8SCB|1|5|U|4232
8SCB|1|5|A|4233
8SCB|1|5|A|4234
8SCB|1|5|G|4235
*
8SCB|1|5|U|4289
8SCB|1|5|U|4290
8SCB|1|5|G|4291
8SCB|1|5|A|4292
8SCB|1|5|PSU|4293
*
8SCB|1|5|A|4317
8SCB|1|5|C|4318
8SCB|1|5|C|4319
*
8SCB|1|5|G|4328
8SCB|1|5|G|4329
8SCB|1|5|G|4330
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
- Chain o
- eL42
Coloring options: