J4_8SYL_008

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8SYL_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0494

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8SYL|1|A|A|1772
8SYL|1|A|A|1773
8SYL|1|A|C|1774
8SYL|1|A|U|1775
8SYL|1|A|G|1776
*
8SYL|1|A|C|1788
8SYL|1|A|A|1789
8SYL|1|A|C|1790
8SYL|1|A|A|1791
8SYL|1|A|G|1792
*
8SYL|1|A|U|1827
8SYL|1|A|G|1828
8SYL|1|A|A|1829
8SYL|1|A|C|1830
*
8SYL|1|A|G|1975
8SYL|1|A|U|1976
8SYL|1|A|A|1977
8SYL|1|A|A|1978
8SYL|1|A|U|1979

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2