J4_8T2Y_009

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T2Y_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0581

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8T2Y|1|A1|U|3010
8T2Y|1|A1|A|3011
8T2Y|1|A1|A|3012
*
8T2Y|1|A1|U|3042
8T2Y|1|A1|C|3043
*
8T2Y|1|A1|G|3098
8T2Y|1|A1|C|3099
8T2Y|1|A1|U|3100
*
8T2Y|1|A1|A|3134
8T2Y|1|A1|U|3135
8T2Y|1|A1|G|3136

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A

Chain AV

60S ribosomal protein L23-A