J4_8T3B_006
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GAC(PSU)G*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T3B_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0775
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T3B|1|A1|G|2130
8T3B|1|A1|A|2131
8T3B|1|A1|C|2132
8T3B|1|A1|PSU|2133
8T3B|1|A1|G|2134
*
8T3B|1|A1|C|2146
8T3B|1|A1|A|2147
8T3B|1|A1|U|2148
8T3B|1|A1|A|2149
8T3B|1|A1|G|2150
*
8T3B|1|A1|U|2186
8T3B|1|A1|G|2187
8T3B|1|A1|A|2188
8T3B|1|A1|U|2189
8T3B|1|A1|U|2190
*
8T3B|1|A1|A|2317
8T3B|1|A1|U|2318
8T3B|1|A1|U|2319
8T3B|1|A1|A|2320
8T3B|1|A1|A|2321
8T3B|1|A1|C|2322
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- 60S ribosomal protein L41-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: