J4_8T5D_009

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T5D_009 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0637

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8T5D|1|B|A|1772
8T5D|1|B|A|1773
8T5D|1|B|C|1774
8T5D|1|B|U|1775
8T5D|1|B|G|1776
*
8T5D|1|B|C|1788
8T5D|1|B|A|1789
8T5D|1|B|C|1790
8T5D|1|B|A|1791
8T5D|1|B|G|1792
*
8T5D|1|B|U|1827
8T5D|1|B|G|1828
8T5D|1|B|A|1829
8T5D|1|B|C|1830
*
8T5D|1|B|G|1975
8T5D|1|B|U|1976
8T5D|1|B|A|1977
8T5D|1|B|A|1978
8T5D|1|B|U|1979

Current chains

Chain B

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA