J4_8T5H_005

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8T5H|1|B|G|1271, 8T5H|1|B|A|1272, 8T5H|1|B|U|1273, 8T5H|1|B|A|1274, 8T5H|1|B|C|1646, 8T5H|1|B|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T5H_005 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1364

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8T5H|1|B|C|1270
8T5H|1|B|G|1271
8T5H|1|B|A|1272
8T5H|1|B|U|1273
8T5H|1|B|A|1274
8T5H|1|B|A|1275
8T5H|1|B|A|1276
*
8T5H|1|B|U|1294
8T5H|1|B|C|1295
*
8T5H|1|B|G|1645
8T5H|1|B|C|1646
8T5H|1|B|U|1647
8T5H|1|B|U|1648
*
8T5H|1|B|A|2009
8T5H|1|B|G|2010

Current chains

Chain B

23S

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22