J4_8T5H_014

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8T5H|1|v|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T5H_014 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2568

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8T5H|1|v|G|142
8T5H|1|v|A|143
8T5H|1|v|G|144
*
8T5H|1|v|C|178
8T5H|1|v|A|179
8T5H|1|v|U|180
8T5H|1|v|A|181
8T5H|1|v|A|182
8T5H|1|v|C|183
8T5H|1|v|G|184
*
8T5H|1|v|C|193
8T5H|1|v|C|194
8T5H|1|v|A|195
8T5H|1|v|A|196
8T5H|1|v|A|197
8T5H|1|v|G|198
*
8T5H|1|v|U|219
8T5H|1|v|G|220
8T5H|1|v|C|221

Current chains

Chain v

16S

Nearby chains

Chain s

30S ribosomal protein S20