J4_8T8C_025

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T8C_025 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0959

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8T8C|1|2a|G|142
8T8C|1|2a|A|143
8T8C|1|2a|G|144
*
8T8C|1|2a|C|178
8T8C|1|2a|A|179
8T8C|1|2a|U|180
8T8C|1|2a|G|181
8T8C|1|2a|U|182
8T8C|1|2a|G|183
*
8T8C|1|2a|C|194
8T8C|1|2a|A|195
8T8C|1|2a|A|196
8T8C|1|2a|A|197
8T8C|1|2a|G|198
*
8T8C|1|2a|C|219
8T8C|1|2a|G|220
8T8C|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20