J4_8UD6_007

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UD6_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0414

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8UD6|1|1A|G|1772
8UD6|1|1A|A|1773
8UD6|1|1A|C|1774
8UD6|1|1A|U|1775
8UD6|1|1A|G|1776
*
8UD6|1|1A|C|1788
8UD6|1|1A|A|1789
8UD6|1|1A|C|1790
8UD6|1|1A|A|1791
8UD6|1|1A|G|1792
*
8UD6|1|1A|C|1827
8UD6|1|1A|G|1828
8UD6|1|1A|A|1829
8UD6|1|1A|C|1830
*
8UD6|1|1A|G|1975
8UD6|1|1A|U|1976
8UD6|1|1A|A|1977
8UD6|1|1A|A|1978
8UD6|1|1A|C|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA