J4_8UD6_012
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- 8UD6|1|1a|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UD6_012 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.0878
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_36568.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8UD6|1|1a|G|142
8UD6|1|1a|A|143
8UD6|1|1a|G|144
*
8UD6|1|1a|C|178
8UD6|1|1a|A|179
8UD6|1|1a|U|180
8UD6|1|1a|G|181
8UD6|1|1a|U|182
8UD6|1|1a|G|183
*
8UD6|1|1a|C|194
8UD6|1|1a|A|195
8UD6|1|1a|A|196
8UD6|1|1a|A|197
8UD6|1|1a|G|198
*
8UD6|1|1a|C|219
8UD6|1|1a|G|220
8UD6|1|1a|C|221
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
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