J4_8UD7_012

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

8UD7|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UD7_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0881

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8UD7|1|1a|G|142
8UD7|1|1a|A|143
8UD7|1|1a|G|144
*
8UD7|1|1a|C|178
8UD7|1|1a|A|179
8UD7|1|1a|U|180
8UD7|1|1a|G|181
8UD7|1|1a|U|182
8UD7|1|1a|G|183
*
8UD7|1|1a|C|194
8UD7|1|1a|A|195
8UD7|1|1a|A|196
8UD7|1|1a|A|197
8UD7|1|1a|G|198
*
8UD7|1|1a|C|219
8UD7|1|1a|G|220
8UD7|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20