J4_8UPO_003

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8UPO|1|D|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UPO_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1171

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UPO|1|D|G|115
8UPO|1|D|A|116
8UPO|1|D|G|117
8UPO|1|D|U|118
8UPO|1|D|A|119
8UPO|1|D|A|120
8UPO|1|D|U|121
8UPO|1|D|G|122
*
8UPO|1|D|U|239
8UPO|1|D|G|240
*
8UPO|1|D|C|286
8UPO|1|D|U|287
8UPO|1|D|A|288
8UPO|1|D|G|289
*
8UPO|1|D|C|311
8UPO|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17