J4_8UPO_004

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8UPO|1|D|C|183, 8UPO|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UPO_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0931

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8UPO|1|D|G|142
8UPO|1|D|A|143
8UPO|1|D|G|144
*
8UPO|1|D|C|178
8UPO|1|D|A|179
8UPO|1|D|U|180
8UPO|1|D|A|181
8UPO|1|D|A|182
8UPO|1|D|C|183
8UPO|1|D|G|184
*
8UPO|1|D|C|193
8UPO|1|D|C|194
8UPO|1|D|A|195
8UPO|1|D|A|196
8UPO|1|D|A|197
8UPO|1|D|G|198
*
8UPO|1|D|U|219
8UPO|1|D|G|220
8UPO|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20