J4_8UPO_009

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8UPO|1|a|G|1271, 8UPO|1|a|A|1272, 8UPO|1|a|U|1273, 8UPO|1|a|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UPO_009 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0652

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8UPO|1|a|C|1270
8UPO|1|a|G|1271
8UPO|1|a|A|1272
8UPO|1|a|U|1273
8UPO|1|a|A|1274
8UPO|1|a|A|1275
8UPO|1|a|A|1276
*
8UPO|1|a|U|1294
8UPO|1|a|C|1295
*
8UPO|1|a|G|1645
8UPO|1|a|C|1646
8UPO|1|a|U|1647
8UPO|1|a|U|1648
*
8UPO|1|a|A|2009
8UPO|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain w

50S ribosomal protein L17