J4_8UPO_015

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UPO_015 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0736

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8UPO|1|a|G|2643
8UPO|1|a|G|2644
8UPO|1|a|G|2645
8UPO|1|a|C|2646
*
8UPO|1|a|G|2674
8UPO|1|a|A|2675
8UPO|1|a|C|2676
*
8UPO|1|a|G|2731
8UPO|1|a|G|2732
8UPO|1|a|A|2733
8UPO|1|a|A|2734
8UPO|1|a|G|2735
*
8UPO|1|a|U|2769
8UPO|1|a|G|2770
8UPO|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain t

50S ribosomal protein L14