3D structure

PDB id
8UQL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
8UQL|1|a|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8UQL_014 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.0857
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

8UQL|1|a|C|2285
8UQL|1|a|G|2286
8UQL|1|a|A|2287
8UQL|1|a|A|2288
8UQL|1|a|G|2289
*
8UQL|1|a|U|2343
8UQL|1|a|U|2344
8UQL|1|a|G|2345
8UQL|1|a|A|2346
8UQL|1|a|C|2347
*
8UQL|1|a|G|2370
8UQL|1|a|G|2371
8UQL|1|a|U|2372
*
8UQL|1|a|A|2381
8UQL|1|a|G|2382
8UQL|1|a|G|2383

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
50S ribosomal protein L27
Chain k
50S ribosomal protein L33
Chain o
50S ribosomal protein L35
Chain x
50S ribosomal protein L18

Coloring options:


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