J4_8UQM_006

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8UQM|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQM_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1036

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8UQM|1|a|C|268
8UQM|1|a|C|269
*
8UQM|1|a|G|370
8UQM|1|a|A|371
8UQM|1|a|G|372
8UQM|1|a|U|373
8UQM|1|a|A|374
8UQM|1|a|G|375
*
8UQM|1|a|U|399
8UQM|1|a|G|400
8UQM|1|a|A|401
8UQM|1|a|A|402
8UQM|1|a|U|403
8UQM|1|a|A|404
8UQM|1|a|U|405
8UQM|1|a|G|406
*
8UQM|1|a|C|421
8UQM|1|a|A|422
8UQM|1|a|A|423
8UQM|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9