J4_8UQM_011

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8UQM|1|a|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQM_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0677

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8UQM|1|a|U|1313
8UQM|1|a|C|1314
*
8UQM|1|a|G|1338
8UQM|1|a|G|1339
8UQM|1|a|U|1340
8UQM|1|a|G|1341
8UQM|1|a|A|1342
8UQM|1|a|G|1343
*
8UQM|1|a|C|1404
8UQM|1|a|U|1405
*
8UQM|1|a|A|1597
8UQM|1|a|A|1598
8UQM|1|a|U|1599
8UQM|1|a|C|1600
8UQM|1|a|G|1601
8UQM|1|a|U|1602
8UQM|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23