J4_8UR0_004

3D structure

PDB id

8UR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8UR0|1|D|C|183, 8UR0|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UR0_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0931

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8UR0|1|D|G|142
8UR0|1|D|A|143
8UR0|1|D|G|144
*
8UR0|1|D|C|178
8UR0|1|D|A|179
8UR0|1|D|U|180
8UR0|1|D|A|181
8UR0|1|D|A|182
8UR0|1|D|C|183
8UR0|1|D|G|184
*
8UR0|1|D|C|193
8UR0|1|D|C|194
8UR0|1|D|A|195
8UR0|1|D|A|196
8UR0|1|D|A|197
8UR0|1|D|G|198
*
8UR0|1|D|U|219
8UR0|1|D|G|220
8UR0|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20