J4_8UR0_015
3D structure
- PDB id
- 8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UR0_015 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0736
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UR0|1|a|G|2643
8UR0|1|a|G|2644
8UR0|1|a|G|2645
8UR0|1|a|C|2646
*
8UR0|1|a|G|2674
8UR0|1|a|A|2675
8UR0|1|a|C|2676
*
8UR0|1|a|G|2731
8UR0|1|a|G|2732
8UR0|1|a|A|2733
8UR0|1|a|A|2734
8UR0|1|a|G|2735
*
8UR0|1|a|U|2769
8UR0|1|a|G|2770
8UR0|1|a|C|2771
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain s
- 50S ribosomal protein L13
- Chain t
- 50S ribosomal protein L14
Coloring options: