J4_8URI_003

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8URI|1|D|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8URI_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1171

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8URI|1|D|G|115
8URI|1|D|A|116
8URI|1|D|G|117
8URI|1|D|U|118
8URI|1|D|A|119
8URI|1|D|A|120
8URI|1|D|U|121
8URI|1|D|G|122
*
8URI|1|D|U|239
8URI|1|D|G|240
*
8URI|1|D|C|286
8URI|1|D|U|287
8URI|1|D|A|288
8URI|1|D|G|289
*
8URI|1|D|C|311
8URI|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17