J4_8URI_006

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8URI|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8URI_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1036

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8URI|1|a|C|268
8URI|1|a|C|269
*
8URI|1|a|G|370
8URI|1|a|A|371
8URI|1|a|G|372
8URI|1|a|U|373
8URI|1|a|A|374
8URI|1|a|G|375
*
8URI|1|a|U|399
8URI|1|a|G|400
8URI|1|a|A|401
8URI|1|a|A|402
8URI|1|a|U|403
8URI|1|a|A|404
8URI|1|a|U|405
8URI|1|a|G|406
*
8URI|1|a|C|421
8URI|1|a|A|422
8URI|1|a|A|423
8URI|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9