J4_8URY_006

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8URY|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8URY_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1036

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8URY|1|a|C|268
8URY|1|a|C|269
*
8URY|1|a|G|370
8URY|1|a|A|371
8URY|1|a|G|372
8URY|1|a|U|373
8URY|1|a|A|374
8URY|1|a|G|375
*
8URY|1|a|U|399
8URY|1|a|G|400
8URY|1|a|A|401
8URY|1|a|A|402
8URY|1|a|U|403
8URY|1|a|A|404
8URY|1|a|U|405
8URY|1|a|G|406
*
8URY|1|a|C|421
8URY|1|a|A|422
8URY|1|a|A|423
8URY|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9