J4_8UT0_002

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

8UT0|1|2|A|623, 8UT0|1|2|U|1024, 8UT0|1|2|A|1026, 8UT0|1|2|U|1029, 8UT0|1|2|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UT0_002 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.0817

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UT0|1|2|A|622
8UT0|1|2|A|623
8UT0|1|2|G|624
*
8UT0|1|2|C|975
8UT0|1|2|G|976
8UT0|1|2|A|977
8UT0|1|2|A|978
8UT0|1|2|A|979
8UT0|1|2|G|980
*
8UT0|1|2|C|1021
8UT0|1|2|C|1022
8UT0|1|2|A|1023
8UT0|1|2|U|1024
8UT0|1|2|A|1025
8UT0|1|2|A|1026
8UT0|1|2|A|1027
8UT0|1|2|C|1028
8UT0|1|2|U|1029
8UT0|1|2|A|1030
8UT0|1|2|U|1031
8UT0|1|2|G|1032
*
8UT0|1|2|U|1103
8UT0|1|2|U|1104

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

60S ribosomal protein L41-A

Chain SX

40S ribosomal protein S11-A

Chain SY

40S ribosomal protein S13

Chain SZ

40S ribosomal protein S14-B

Chain Sb

40S ribosomal protein S22-A

Chain Sc

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S26-B