J4_8UT0_004

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UT0_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1162

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8UT0|1|A|C|185
8UT0|1|A|U|186
8UT0|1|A|A|187
8UT0|1|A|U|188
8UT0|1|A|G|189
*
8UT0|1|A|C|205
8UT0|1|A|G|206
8UT0|1|A|U|207
8UT0|1|A|C|208
*
8UT0|1|A|G|212
8UT0|1|A|A|213
8UT0|1|A|G|214
*
8UT0|1|A|C|226
8UT0|1|A|G|227
8UT0|1|A|U|228
8UT0|1|A|G|229
8UT0|1|A|U|230
8UT0|1|A|G|231

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A