J4_8UU4_005

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8UU4|1|A|U|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU4_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.082

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8UU4|1|A|G|1354
8UU4|1|A|U|1355
8UU4|1|A|U|1356
8UU4|1|A|U|1357
8UU4|1|A|C|1358
*
8UU4|1|A|G|1382
8UU4|1|A|G|1383
8UU4|1|A|U|1384
8UU4|1|A|U|1385
8UU4|1|A|A|1386
8UU4|1|A|G|1387
*
8UU4|1|A|C|1448
8UU4|1|A|C|1449
*
8UU4|1|A|G|1646
8UU4|1|A|C|1647
8UU4|1|A|C|1648
8UU4|1|A|C|1649
8UU4|1|A|G|1650
8UU4|1|A|U|1651
8UU4|1|A|A|1652
8UU4|1|A|C|1653

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain V

Large ribosomal subunit protein uL23