J4_8UU4_007
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GCAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UU4_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.067
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UU4|1|A|G|1805
8UU4|1|A|A|1806
8UU4|1|A|C|1807
8UU4|1|A|U|1808
8UU4|1|A|G|1809
*
8UU4|1|A|C|1821
8UU4|1|A|A|1822
8UU4|1|A|C|1823
8UU4|1|A|A|1824
8UU4|1|A|G|1825
*
8UU4|1|A|U|1860
8UU4|1|A|G|1861
8UU4|1|A|A|1862
8UU4|1|A|C|1863
*
8UU4|1|A|G|2008
8UU4|1|A|C|2009
8UU4|1|A|A|2010
8UU4|1|A|A|2011
8UU4|1|A|C|2012
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
Coloring options: