J4_8UU4_009
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8UU4|1|A|A|2321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UU4_009 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1308
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UU4|1|A|C|2318
8UU4|1|A|A|2319
8UU4|1|A|A|2320
8UU4|1|A|A|2321
8UU4|1|A|G|2322
*
8UU4|1|A|U|2376
8UU4|1|A|U|2377
8UU4|1|A|G|2378
8UU4|1|A|A|2379
8UU4|1|A|C|2380
*
8UU4|1|A|G|2403
8UU4|1|A|G|2404
8UU4|1|A|G|2405
*
8UU4|1|A|C|2414
8UU4|1|A|G|2415
8UU4|1|A|G|2416
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain Q
- Large ribosomal subunit protein uL18
- Chain Y
- Large ribosomal subunit protein bL27
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