J4_8UU6_009

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8UU6|1|A|A|2321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU6_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.149

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8UU6|1|A|C|2318
8UU6|1|A|A|2319
8UU6|1|A|A|2320
8UU6|1|A|A|2321
8UU6|1|A|G|2322
*
8UU6|1|A|U|2376
8UU6|1|A|U|2377
8UU6|1|A|G|2378
8UU6|1|A|A|2379
8UU6|1|A|C|2380
*
8UU6|1|A|G|2403
8UU6|1|A|G|2404
8UU6|1|A|G|2405
*
8UU6|1|A|C|2414
8UU6|1|A|G|2415
8UU6|1|A|G|2416

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain 7

Large ribosomal subunit protein bL35

Chain Y

Large ribosomal subunit protein bL27