J4_8UU8_002

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGCC*GAC*GGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU8_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1208

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8UU8|1|A|U|339
8UU8|1|A|G|340
8UU8|1|A|A|341
8UU8|1|A|A|342
8UU8|1|A|G|343
*
8UU8|1|A|C|359
8UU8|1|A|G|360
8UU8|1|A|C|361
8UU8|1|A|C|362
*
8UU8|1|A|G|366
8UU8|1|A|A|367
8UU8|1|A|C|368
*
8UU8|1|A|G|380
8UU8|1|A|G|381
8UU8|1|A|U|382
8UU8|1|A|A|383
8UU8|1|A|G|384

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

Large ribosomal subunit protein uL24